Parasegetibacter luojiensis gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from a forest soil.
Identifieur interne : 003538 ( Main/Exploration ); précédent : 003537; suivant : 003539Parasegetibacter luojiensis gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from a forest soil.
Auteurs : Kundi Zhang [République populaire de Chine] ; Yali Tang ; Lei Zhang ; Jun Dai ; Yang Wang ; Xuesong Luo ; Ming Liu ; Guangchao Luo ; Chengxiang FangSource :
- International journal of systematic and evolutionary microbiology [ 1466-5026 ] ; 2009.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), ADN ribosomique (génétique), ARN ribosomique 16S (génétique), Acides gras (composition chimique), Acides gras (métabolisme), Bacteroidetes (classification), Bacteroidetes (génétique), Bacteroidetes (isolement et purification), Bacteroidetes (métabolisme), Données de séquences moléculaires (MeSH), Microbiologie du sol (MeSH), Phylogenèse (MeSH).
- MESH :
- composition chimique : Acides gras, Bacteroidetes.
- génétique : ADN bactérien, ADN ribosomique, ARN ribosomique 16S, Bacteroidetes.
- isolement et purification : Bacteroidetes.
- métabolisme : Acides gras, Bacteroidetes.
- Données de séquences moléculaires, Microbiologie du sol, Phylogenèse.
English descriptors
- KwdEn :
- Bacteroidetes (classification), Bacteroidetes (genetics), Bacteroidetes (isolation & purification), Bacteroidetes (metabolism), DNA, Bacterial (genetics), DNA, Ribosomal (genetics), Fatty Acids (chemistry), Fatty Acids (metabolism), Molecular Sequence Data (MeSH), Phylogeny (MeSH), RNA, Ribosomal, 16S (genetics), Soil Microbiology (MeSH).
- MESH :
- chemical , chemistry : Fatty Acids.
- chemical , genetics : DNA, Bacterial, DNA, Ribosomal, RNA, Ribosomal, 16S.
- classification : Bacteroidetes.
- genetics : Bacteroidetes.
- isolation & purification : Bacteroidetes.
- metabolism : Bacteroidetes, Fatty Acids.
- Molecular Sequence Data, Phylogeny, Soil Microbiology.
Abstract
A novel golden-yellow-coloured strain, designated RHYL-37(T), was isolated from a soil sample from a forest of Euphrates poplar (Populus euphratica) in Xinjiang, China. The cells were strictly aerobic, Gram-staining-negative, heterotrophic, non-spore-forming rods that were motile by gliding. Growth occurred at 17-37 degrees C (optimum, 30 degrees C), at pH 5.0-9.0 (optimum, pH 7.0) and with 0-1 % NaCl (w/v; optimum, 0 %). Phylogenetic analysis based on 16S rRNA gene sequences indicated that the novel isolate formed a cluster with members of the genera Segetibacter, Terrimonas, Niastella, Niabella and Chitinophaga in the family 'Chitinophagaceae' in the phylum Bacteroidetes. Sequence similarities with the type strains of recognized species ranged from 90.6 to 94.0 %. The predominant isoprenoid quinone was MK-7 and the major cellular fatty acids were iso-C(15 : 0), iso-C(15 : 1), C(16 : 0) and iso-C(17 : 0) 3-OH. The DNA G+C content was 39.7 mol%. On the basis of the phylogenetic, physiological and chemotaxonomic data, strain RHYL-37(T) represents a novel genus and species in the family 'Chitinophagaceae', for which the name Parasegetibacter luojiensis gen. nov., sp. nov. is proposed. The type strain of Parasegetibacter luojiensis is RHYL-37(T) (=CCTCC AB 208240(T)=KCTC 22561(T)).
DOI: 10.1099/ijs.0.008763-0
PubMed: 19643901
Affiliations:
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uniqKey="Liu M" first="Ming" last="Liu">Ming Liu</name></author><author><name sortKey="Luo, Guangchao" sort="Luo, Guangchao" uniqKey="Luo G" first="Guangchao" last="Luo">Guangchao Luo</name></author><author><name sortKey="Fang, Chengxiang" sort="Fang, Chengxiang" uniqKey="Fang C" first="Chengxiang" last="Fang">Chengxiang Fang</name></author></analytic><series><title level="j">International journal of systematic and evolutionary microbiology</title><idno type="ISSN">1466-5026</idno><imprint><date when="2009" type="published">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacteroidetes (classification)</term><term>Bacteroidetes (genetics)</term><term>Bacteroidetes (isolation & purification)</term><term>Bacteroidetes (metabolism)</term><term>DNA, Bacterial (genetics)</term><term>DNA, Ribosomal (genetics)</term><term>Fatty Acids (chemistry)</term><term>Fatty Acids (metabolism)</term><term>Molecular Sequence Data (MeSH)</term><term>Phylogeny (MeSH)</term><term>RNA, Ribosomal, 16S (genetics)</term><term>Soil Microbiology (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (génétique)</term><term>ADN ribosomique (génétique)</term><term>ARN ribosomique 16S (génétique)</term><term>Acides gras (composition chimique)</term><term>Acides gras (métabolisme)</term><term>Bacteroidetes (classification)</term><term>Bacteroidetes (génétique)</term><term>Bacteroidetes (isolement et purification)</term><term>Bacteroidetes (métabolisme)</term><term>Données de séquences moléculaires (MeSH)</term><term>Microbiologie du sol (MeSH)</term><term>Phylogenèse (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Fatty Acids</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Bacterial</term><term>DNA, Ribosomal</term><term>RNA, Ribosomal, 16S</term></keywords><keywords 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The cells were strictly aerobic, Gram-staining-negative, heterotrophic, non-spore-forming rods that were motile by gliding. Growth occurred at 17-37 degrees C (optimum, 30 degrees C), at pH 5.0-9.0 (optimum, pH 7.0) and with 0-1 % NaCl (w/v; optimum, 0 %). Phylogenetic analysis based on 16S rRNA gene sequences indicated that the novel isolate formed a cluster with members of the genera Segetibacter, Terrimonas, Niastella, Niabella and Chitinophaga in the family 'Chitinophagaceae' in the phylum Bacteroidetes. Sequence similarities with the type strains of recognized species ranged from 90.6 to 94.0 %. The predominant isoprenoid quinone was MK-7 and the major cellular fatty acids were iso-C(15 : 0), iso-C(15 : 1), C(16 : 0) and iso-C(17 : 0) 3-OH. The DNA G+C content was 39.7 mol%. On the basis of the phylogenetic, physiological and chemotaxonomic data, strain RHYL-37(T) represents a novel genus and species in the family 'Chitinophagaceae', for which the name Parasegetibacter luojiensis gen. nov., sp. nov. is proposed. The type strain of Parasegetibacter luojiensis is RHYL-37(T) (=CCTCC AB 208240(T)=KCTC 22561(T)).</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">19643901</PMID><DateCompleted><Year>2010</Year><Month>01</Month><Day>26</Day></DateCompleted><DateRevised><Year>2009</Year><Month>12</Month><Day>07</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">1466-5026</ISSN><JournalIssue CitedMedium="Print"><Volume>59</Volume><Issue>Pt 12</Issue><PubDate><Year>2009</Year><Month>Dec</Month></PubDate></JournalIssue><Title>International journal of systematic and evolutionary microbiology</Title><ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation></Journal><ArticleTitle>Parasegetibacter luojiensis gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from a forest soil.</ArticleTitle><Pagination><MedlinePgn>3058-62</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1099/ijs.0.008763-0</ELocationID><Abstract><AbstractText>A novel golden-yellow-coloured strain, designated RHYL-37(T), was isolated from a soil sample from a forest of Euphrates poplar (Populus euphratica) in Xinjiang, China. The cells were strictly aerobic, Gram-staining-negative, heterotrophic, non-spore-forming rods that were motile by gliding. Growth occurred at 17-37 degrees C (optimum, 30 degrees C), at pH 5.0-9.0 (optimum, pH 7.0) and with 0-1 % NaCl (w/v; optimum, 0 %). Phylogenetic analysis based on 16S rRNA gene sequences indicated that the novel isolate formed a cluster with members of the genera Segetibacter, Terrimonas, Niastella, Niabella and Chitinophaga in the family 'Chitinophagaceae' in the phylum Bacteroidetes. Sequence similarities with the type strains of recognized species ranged from 90.6 to 94.0 %. The predominant isoprenoid quinone was MK-7 and the major cellular fatty acids were iso-C(15 : 0), iso-C(15 : 1), C(16 : 0) and iso-C(17 : 0) 3-OH. The DNA G+C content was 39.7 mol%. On the basis of the phylogenetic, physiological and chemotaxonomic data, strain RHYL-37(T) represents a novel genus and species in the family 'Chitinophagaceae', for which the name Parasegetibacter luojiensis gen. nov., sp. nov. is proposed. The type strain of Parasegetibacter luojiensis is RHYL-37(T) (=CCTCC AB 208240(T)=KCTC 22561(T)).</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Kundi</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Wuhan University, Wuhan 430072, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tang</LastName><ForeName>Yali</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Lei</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Dai</LastName><ForeName>Jun</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Yang</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Luo</LastName><ForeName>Xuesong</ForeName><Initials>X</Initials></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Ming</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Luo</LastName><ForeName>Guangchao</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Fang</LastName><ForeName>Chengxiang</ForeName><Initials>C</Initials></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>EU877263</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2009</Year><Month>07</Month><Day>30</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Int J Syst Evol Microbiol</MedlineTA><NlmUniqueID>100899600</NlmUniqueID><ISSNLinking>1466-5026</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D041963" MajorTopicYN="N">Bacteroidetes</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004275" MajorTopicYN="N">DNA, Ribosomal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2009</Year><Month>8</Month><Day>1</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2009</Year><Month>8</Month><Day>1</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2010</Year><Month>1</Month><Day>27</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">19643901</ArticleId><ArticleId IdType="pii">ijs.0.008763-0</ArticleId><ArticleId IdType="doi">10.1099/ijs.0.008763-0</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country><region><li>Hubei</li></region><settlement><li>Wuhan</li></settlement><orgName><li>Université de Wuhan</li></orgName></list><tree><noCountry><name sortKey="Dai, Jun" sort="Dai, Jun" uniqKey="Dai J" first="Jun" last="Dai">Jun Dai</name><name sortKey="Fang, Chengxiang" sort="Fang, Chengxiang" uniqKey="Fang C" first="Chengxiang" last="Fang">Chengxiang Fang</name><name sortKey="Liu, Ming" sort="Liu, Ming" uniqKey="Liu M" first="Ming" last="Liu">Ming Liu</name><name sortKey="Luo, Guangchao" sort="Luo, Guangchao" uniqKey="Luo G" first="Guangchao" last="Luo">Guangchao Luo</name><name sortKey="Luo, Xuesong" sort="Luo, Xuesong" uniqKey="Luo X" first="Xuesong" last="Luo">Xuesong Luo</name><name sortKey="Tang, Yali" sort="Tang, Yali" uniqKey="Tang Y" first="Yali" last="Tang">Yali Tang</name><name sortKey="Wang, Yang" sort="Wang, Yang" uniqKey="Wang Y" first="Yang" last="Wang">Yang Wang</name><name sortKey="Zhang, Lei" sort="Zhang, Lei" uniqKey="Zhang L" first="Lei" last="Zhang">Lei Zhang</name></noCountry><country name="République populaire de Chine"><region name="Hubei"><name sortKey="Zhang, Kundi" sort="Zhang, Kundi" uniqKey="Zhang K" first="Kundi" 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